J3_7CPV_003

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CC*GAGGAAGCGUCGCCG*CACGGGG

Length

24 nucleotides

Bulged bases

7CPV|1|L5|A|857, 7CPV|1|L5|C|860, 7CPV|1|L5|U|871, 7CPV|1|L5|C|1095

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|720
7CPV|1|L5|C|721
*
7CPV|1|L5|G|853
7CPV|1|L5|A|854
7CPV|1|L5|G|855
7CPV|1|L5|G|856
7CPV|1|L5|A|857
7CPV|1|L5|A|858
7CPV|1|L5|G|859
7CPV|1|L5|C|860
7CPV|1|L5|G|870
7CPV|1|L5|U|871
7CPV|1|L5|C|872
7CPV|1|L5|G|873
7CPV|1|L5|C|874
7CPV|1|L5|C|875
7CPV|1|L5|G|876
*
7CPV|1|L5|C|1093
7CPV|1|L5|A|1094
7CPV|1|L5|C|1095
7CPV|1|L5|G|1096
7CPV|1|L5|G|1097
7CPV|1|L5|G|1098
7CPV|1|L5|G|1099

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

60S ribosomal protein L7

Chain Le

60S ribosomal protein L32