J3_7CPV_032

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

7CPV|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|C|196
7CPV|1|L5|A|197
7CPV|1|L5|A|198
7CPV|1|L5|G|199
*
7CPV|1|L5|C|215
7CPV|1|L5|C|216
7CPV|1|L5|C|217
7CPV|1|L5|A|218
7CPV|1|L5|G|219
7CPV|1|L5|C|220
7CPV|1|L5|C|221
7CPV|1|L5|C|222
7CPV|1|L5|G|223
7CPV|1|L5|U|224
7CPV|1|L5|G|225
7CPV|1|L5|G|226
7CPV|1|L5|A|227
7CPV|1|L5|C|228
*
7CPV|1|L5|G|240
7CPV|1|L5|G|241
7CPV|1|L5|U|242
7CPV|1|L5|A|243
7CPV|1|L5|G|244

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26