J3_7CPV_033
3D structure
- PDB id
- 7CPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 80S ribosome from mouse testis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.03 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 7CPV|1|L5|U|353, 7CPV|1|L5|A|361, 7CPV|1|L8|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7CPV_033 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0578
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.2
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 11
Unit IDs
7CPV|1|L5|C|350
7CPV|1|L5|G|351
7CPV|1|L5|A|352
7CPV|1|L5|U|353
7CPV|1|L5|A|354
7CPV|1|L5|G|355
7CPV|1|L5|U|356
7CPV|1|L5|C|357
7CPV|1|L5|A|358
7CPV|1|L5|A|359
7CPV|1|L5|C|360
7CPV|1|L5|A|361
7CPV|1|L5|A|362
7CPV|1|L5|G|363
7CPV|1|L5|U|364
7CPV|1|L5|A|365
7CPV|1|L5|C|366
*
7CPV|1|L5|G|373
7CPV|1|L5|G|374
7CPV|1|L5|A|375
7CPV|1|L5|A|376
7CPV|1|L5|A|377
7CPV|1|L5|G|378
*
7CPV|1|L8|C|21
7CPV|1|L8|U|22
7CPV|1|L8|C|23
7CPV|1|L8|G|24
Current chains
- Chain L5
- Mus musculus 28S ribosomal RNA
- Chain L8
- Mus musculus 5.8S ribosomal RNA
Nearby chains
- Chain LC
- 60S ribosomal protein L4
- Chain LY
- 60S ribosomal protein L26
- Chain Lj
- 60S ribosomal protein L37
- Chain Ll
- Ribosomal protein L39-like
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