J3_7CPV_039

3D structure

PDB id

7CPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 80S ribosome from mouse testis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.03 Å

Loop

Sequence

GUUG*CGUUC*GUUGAACGCACGUUC

Length

24 nucleotides

Bulged bases

7CPV|1|L5|U|4528, 7CPV|1|L5|U|4584, 7CPV|1|L5|A|4586, 7CPV|1|L5|C|4588, 7CPV|1|L5|A|4591, 7CPV|1|L5|C|4592

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7CPV|1|L5|G|4405
7CPV|1|L5|U|4406
7CPV|1|L5|U|4407
7CPV|1|L5|G|4408
*
7CPV|1|L5|C|4525
7CPV|1|L5|G|4526
7CPV|1|L5|U|4527
7CPV|1|L5|U|4528
7CPV|1|L5|C|4529
*
7CPV|1|L5|G|4582
7CPV|1|L5|U|4583
7CPV|1|L5|U|4584
7CPV|1|L5|G|4585
7CPV|1|L5|A|4586
7CPV|1|L5|A|4587
7CPV|1|L5|C|4588
7CPV|1|L5|G|4589
7CPV|1|L5|C|4590
7CPV|1|L5|A|4591
7CPV|1|L5|C|4592
7CPV|1|L5|G|4593
7CPV|1|L5|U|4594
7CPV|1|L5|U|4595
7CPV|1|L5|C|4596

Current chains

Chain L5

Mus musculus 28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a