J3_7D4I_002

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7D4I|1|SA|G|42, 7D4I|1|SA|A|47, 7D4I|1|SA|C|433, 7D4I|1|SA|G|434, 7D4I|1|SA|C|435, 7D4I|1|SA|A|436, 7D4I|1|SA|A|437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|A|41
7D4I|1|SA|G|42
7D4I|1|SA|A|43
7D4I|1|SA|U|44
7D4I|1|SA|U|45
7D4I|1|SA|A|46
7D4I|1|SA|A|47
7D4I|1|SA|G|48
*
7D4I|1|SA|C|431
7D4I|1|SA|G|432
7D4I|1|SA|C|433
7D4I|1|SA|G|434
7D4I|1|SA|C|435
7D4I|1|SA|A|436
7D4I|1|SA|A|437
7D4I|1|SA|A|438
7D4I|1|SA|U|439
*
7D4I|1|SA|A|464
7D4I|1|SA|G|465
7D4I|1|SA|U|466

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RJ

Ribosome biogenesis protein BMS1

Chain SY

40S ribosomal protein S23-A