J3_7D4I_007

3D structure

PDB id

7D4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CAGACA*UGGGUGG*CUUG

Length

17 nucleotides

Bulged bases

7D4I|1|SA|G|1218, 7D4I|1|SA|U|1443

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D4I|1|SA|C|1216
7D4I|1|SA|A|1217
7D4I|1|SA|G|1218
7D4I|1|SA|A|1219
7D4I|1|SA|C|1220
7D4I|1|SA|A|1221
*
7D4I|1|SA|U|1262
7D4I|1|SA|G|1263
7D4I|1|SA|G|1264
7D4I|1|SA|G|1265
7D4I|1|SA|U|1266
7D4I|1|SA|G|1267
7D4I|1|SA|G|1268
*
7D4I|1|SA|C|1441
7D4I|1|SA|U|1442
7D4I|1|SA|U|1443
7D4I|1|SA|G|1448

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RG

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain RS

Essential nuclear protein 1