J3_7D4I_008
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7D4I|1|SA|U|1473, 7D4I|1|SA|G|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D4I|1|SA|C|1470
7D4I|1|SA|A|1471
7D4I|1|SA|C|1472
7D4I|1|SA|U|1473
7D4I|1|SA|G|1474
*
7D4I|1|SA|C|1533
7D4I|1|SA|G|1534
7D4I|1|SA|U|1535
7D4I|1|SA|G|1536
7D4I|1|SA|C|1537
7D4I|1|SA|U|1538
7D4I|1|SA|G|1539
7D4I|1|SA|G|1540
*
7D4I|1|SA|C|1571
7D4I|1|SA|G|1572
7D4I|1|SA|A|1573
7D4I|1|SA|G|1574
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain AF
- U3 small nucleolar RNA-associated protein 15
- Chain RH
- Ribosomal RNA small subunit methyltransferase NEP1
- Chain RN
- Nucleolar complex protein 14
- Chain SG
- 40S ribosomal protein S5
- Chain ST
- 40S ribosomal protein S18-A
- Chain SU
- 40S ribosomal protein S19-A
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