J3_7D4I_009
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCAGAG*CUUGACCC*GGGUG
- Length
- 19 nucleotides
- Bulged bases
- 7D4I|1|3A|G|109, 7D4I|1|3A|A|110, 7D4I|1|3A|U|261
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D4I|1|3A|C|106
7D4I|1|3A|C|107
7D4I|1|3A|A|108
7D4I|1|3A|G|109
7D4I|1|3A|A|110
7D4I|1|3A|G|111
*
7D4I|1|3A|C|259
7D4I|1|3A|U|260
7D4I|1|3A|U|261
7D4I|1|3A|G|262
7D4I|1|3A|A|263
7D4I|1|3A|C|264
7D4I|1|3A|C|265
7D4I|1|3A|C|266
*
7D4I|1|3A|G|305
7D4I|1|3A|G|306
7D4I|1|3A|G|307
7D4I|1|3A|U|308
7D4I|1|3A|G|309
Current chains
- Chain 3A
- U3 snoRNA
Nearby chains
- Chain 3B
- rRNA 2'-O-methyltransferase fibrillarin
- Chain 3D
- Nucleolar protein 56
- Chain 3H
- 13 kDa ribonucleoprotein-associated protein
- Chain 5H
- Something about silencing protein 10
- Chain 5J
- rRNA-processing protein FCF2
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