3D structure

PDB id
7D4I (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
UGA*UAAUAG*CAUUA
Length
14 nucleotides
Bulged bases
7D4I|1|SA|U|864
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7D4I_010 not in the Motif Atlas
Homologous match to J3_8P9A_072
Geometric discrepancy: 0.211
The information below is about J3_8P9A_072
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_17385.5
Basepair signature
cWW-F-cWW-cWW-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

7D4I|1|SA|U|633
7D4I|1|SA|G|634
7D4I|1|SA|A|635
*
7D4I|1|SA|U|861
7D4I|1|SA|A|862
7D4I|1|SA|A|863
7D4I|1|SA|U|864
7D4I|1|SA|A|865
7D4I|1|SA|G|866
*
7D4I|1|SA|C|962
7D4I|1|SA|A|963
7D4I|1|SA|U|964
7D4I|1|SA|U|965
7D4I|1|SA|A|966

Current chains

Chain SA
18S rRNA

Nearby chains

Chain SI
40S ribosomal protein S7-A
Chain SO
40S ribosomal protein S13
Chain SX
40S ribosomal protein S22-B
Chain Sc
40S ribosomal protein S27-A

Coloring options:


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