J3_7D4I_010
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGA*UAAUAG*CAUUA
- Length
- 14 nucleotides
- Bulged bases
- 7D4I|1|SA|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D4I_010 not in the Motif Atlas
- Homologous match to J3_8P9A_072
- Geometric discrepancy: 0.211
- The information below is about J3_8P9A_072
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.5
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7D4I|1|SA|U|633
7D4I|1|SA|G|634
7D4I|1|SA|A|635
*
7D4I|1|SA|U|861
7D4I|1|SA|A|862
7D4I|1|SA|A|863
7D4I|1|SA|U|864
7D4I|1|SA|A|865
7D4I|1|SA|G|866
*
7D4I|1|SA|C|962
7D4I|1|SA|A|963
7D4I|1|SA|U|964
7D4I|1|SA|U|965
7D4I|1|SA|A|966
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain SI
- 40S ribosomal protein S7-A
- Chain SO
- 40S ribosomal protein S13
- Chain SX
- 40S ribosomal protein S22-B
- Chain Sc
- 40S ribosomal protein S27-A
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