J3_7D4I_013
3D structure
- PDB id
- 7D4I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of 90S small ribosomal precursors complex with the DEAH-box RNA helicase Dhr1 (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GAAAAAAUUAGAG*CAGG*CUCGAAUAUAUUAGC
- Length
- 32 nucleotides
- Bulged bases
- 7D4I|1|SA|A|788, 7D4I|1|SA|A|789, 7D4I|1|SA|G|797
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7D4I|1|SA|G|751
7D4I|1|SA|A|752
7D4I|1|SA|A|753
7D4I|1|SA|A|754
7D4I|1|SA|A|755
7D4I|1|SA|A|756
7D4I|1|SA|A|757
7D4I|1|SA|U|758
7D4I|1|SA|U|759
7D4I|1|SA|A|760
7D4I|1|SA|G|761
7D4I|1|SA|A|762
7D4I|1|SA|G|763
*
7D4I|1|SA|C|773
7D4I|1|SA|A|774
7D4I|1|SA|G|775
7D4I|1|SA|G|776
*
7D4I|1|SA|C|784
7D4I|1|SA|U|785
7D4I|1|SA|C|786
7D4I|1|SA|G|787
7D4I|1|SA|A|788
7D4I|1|SA|A|789
7D4I|1|SA|U|790
7D4I|1|SA|A|791
7D4I|1|SA|U|792
7D4I|1|SA|A|793
7D4I|1|SA|U|794
7D4I|1|SA|U|795
7D4I|1|SA|A|796
7D4I|1|SA|G|797
7D4I|1|SA|C|798
Current chains
- Chain SA
- 18S rRNA
Nearby chains
- Chain 3F
- Ribosomal RNA-processing protein 9
- Chain SF
- 40S ribosomal protein S4-A
- Chain SK
- 40S ribosomal protein S9-A
- Chain SM
- 40S ribosomal protein S11-A
- Chain SX
- 40S ribosomal protein S22-B
- Chain SZ
- 40S ribosomal protein S24-A
Coloring options: