J3_7D6Z_007

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

7D6Z|1|A|C|1607, 7D6Z|1|A|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D6Z_007 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.1598

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

7D6Z|1|A|C|1306
7D6Z|1|A|A|1307
7D6Z|1|A|A|1308
7D6Z|1|A|G|1309
*
7D6Z|1|A|C|1605
7D6Z|1|A|C|1606
7D6Z|1|A|C|1607
7D6Z|1|A|A|1608
7D6Z|1|A|A|1609
7D6Z|1|A|A|1610
7D6Z|1|A|C|1611
*
7D6Z|1|A|G|1620
7D6Z|1|A|U|1621
7D6Z|1|A|G|1622

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain c

50S ribosomal protein L34