J3_7D6Z_008

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D6Z_008 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1144

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7D6Z|1|A|U|1344
7D6Z|1|A|C|1345
7D6Z|1|A|G|1346
7D6Z|1|A|A|1347
7D6Z|1|A|C|1348
7D6Z|1|A|C|1349
*
7D6Z|1|A|G|1382
7D6Z|1|A|A|1383
7D6Z|1|A|A|1384
7D6Z|1|A|A|1385
*
7D6Z|1|A|U|1402
7D6Z|1|A|A|1403

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain Z

50S ribosomal protein L23