J3_7D6Z_011

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

7D6Z|1|A|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D6Z_011 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.1019

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

7D6Z|1|A|C|2517
7D6Z|1|A|A|2518
7D6Z|1|A|U|2519
7D6Z|1|A|C|2520
*
7D6Z|1|A|G|2545
7D6Z|1|A|U|2546
7D6Z|1|A|A|2547
*
7D6Z|1|A|U|2561
7D6Z|1|A|U|2562
7D6Z|1|A|U|2563
7D6Z|1|A|A|2564
7D6Z|1|A|A|2565
7D6Z|1|A|A|2566
7D6Z|1|A|G|2567

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain K

50S ribosomal protein L14