J3_7D6Z_015
3D structure
- PDB id
- 7D6Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7D6Z_015 not in the Motif Atlas
- Homologous match to J3_5J7L_001
- Geometric discrepancy: 0.153
- The information below is about J3_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67856.4
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7D6Z|1|f|G|46
7D6Z|1|f|C|47
*
7D6Z|1|f|G|361
7D6Z|1|f|G|362
7D6Z|1|f|A|363
7D6Z|1|f|A|364
7D6Z|1|f|U|365
7D6Z|1|f|A|366
7D6Z|1|f|U|367
*
7D6Z|1|f|A|393
7D6Z|1|f|G|394
7D6Z|1|f|C|395
Current chains
- Chain f
- 16S ribosomal rRNA
Nearby chains
- Chain s
- 30S ribosomal protein S12
- Chain w
- 30S ribosomal protein S16
Coloring options: