J3_7D6Z_021

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAG*UGUGC*GAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7D6Z|1|f|G|1003
7D6Z|1|f|A|1004
7D6Z|1|f|A|1005
7D6Z|1|f|G|1006
*
7D6Z|1|f|U|1023
7D6Z|1|f|G|1024
7D6Z|1|f|U|1025
7D6Z|1|f|G|1026
7D6Z|1|f|C|1027
*
7D6Z|1|f|G|1034
7D6Z|1|f|A|1035
7D6Z|1|f|A|1036
7D6Z|1|f|C|1037

Current chains

Chain f

16S ribosomal rRNA

Nearby chains

Chain u

30S ribosomal protein S14