J3_7D6Z_028

3D structure

PDB id

7D6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Molecular model of the cryo-EM structure of 70S ribosome in complex with peptide deformylase and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7D6Z|1|A|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7D6Z_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.0593

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7D6Z|1|A|G|297
7D6Z|1|A|G|298
7D6Z|1|A|A|299
7D6Z|1|A|A|300
7D6Z|1|A|G|301
*
7D6Z|1|A|C|316
7D6Z|1|A|G|317
7D6Z|1|A|C|318
7D6Z|1|A|G|319
7D6Z|1|A|A|320
7D6Z|1|A|U|321
7D6Z|1|A|A|322
7D6Z|1|A|C|323
7D6Z|1|A|A|324
7D6Z|1|A|G|325
*
7D6Z|1|A|C|337
7D6Z|1|A|G|338
7D6Z|1|A|U|339
7D6Z|1|A|A|340
7D6Z|1|A|C|341

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24