J3_7DUG_008
3D structure
- PDB id
- 7DUG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.75 Å
Loop
- Sequence
- CUUG*CAG*CUUACG
- Length
- 13 nucleotides
- Bulged bases
- 7DUG|1|A|C|1214
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUG_008 not in the Motif Atlas
- Homologous match to J3_4LFB_005
- Geometric discrepancy: 0.215
- The information below is about J3_4LFB_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82572.1
- Basepair signature
- cWW-tSH-tWW-F-cWW-tHW-F-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
7DUG|1|A|C|990
7DUG|1|A|U|991
7DUG|1|A|U|992
7DUG|1|A|G|993
*
7DUG|1|A|C|1045
7DUG|1|A|A|1046
7DUG|1|A|G|1047
*
7DUG|1|A|C|1210
7DUG|1|A|U|1211
7DUG|1|A|U|1212
7DUG|1|A|A|1213
7DUG|1|A|C|1214
7DUG|1|A|G|1215
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain N
- 30S ribosomal protein S14 type Z
Coloring options: