J3_7DUH_014

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

CGG*CUAGAC*GUGACG

Length

15 nucleotides

Bulged bases

7DUH|1|A|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUH|1|A|C|586
7DUH|1|A|G|587
7DUH|1|A|G|588
*
7DUH|1|A|C|651
7DUH|1|A|U|652
7DUH|1|A|A|653
7DUH|1|A|G|654
7DUH|1|A|A|655
7DUH|1|A|C|656
*
7DUH|1|A|G|750
7DUH|1|A|U|751
7DUH|1|A|G|752
7DUH|1|A|A|753
7DUH|1|A|C|754
7DUH|1|A|G|755

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains

Chain H

30S ribosomal protein S8

Chain L

30S ribosomal protein S12

Chain O

30S ribosomal protein S15

Chain Q

30S ribosomal protein S17