J3_7DUH_016

3D structure

PDB id

7DUH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

UAGGGAACCCG*UGGGGUGCC*GGAGCCCUA

Length

29 nucleotides

Bulged bases

7DUH|1|A|A|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUH|1|A|U|1000
7DUH|1|A|A|1001
7DUH|1|A|G|1002
7DUH|1|A|G|1003
7DUH|1|A|G|1003|||A
7DUH|1|A|A|1004
7DUH|1|A|A|1005
7DUH|1|A|C|1006
7DUH|1|A|C|1007
7DUH|1|A|C|1008
7DUH|1|A|G|1009
*
7DUH|1|A|U|1020
7DUH|1|A|G|1021
7DUH|1|A|G|1022
7DUH|1|A|G|1023
7DUH|1|A|G|1024
7DUH|1|A|U|1025
7DUH|1|A|G|1026
7DUH|1|A|C|1027
7DUH|1|A|C|1028
*
7DUH|1|A|G|1033
7DUH|1|A|G|1034
7DUH|1|A|A|1035
7DUH|1|A|G|1036
7DUH|1|A|C|1037
7DUH|1|A|C|1038
7DUH|1|A|C|1039
7DUH|1|A|U|1040
7DUH|1|A|A|1041

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains