J3_7DUI_016

3D structure

PDB id

7DUI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

CUAGGGAACCCG*UGGGGUGCC*GGAGCCCUAG

Length

31 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUI|1|A|C|999
7DUI|1|A|U|1000
7DUI|1|A|A|1001
7DUI|1|A|G|1002
7DUI|1|A|G|1003
7DUI|1|A|G|1003|||A
7DUI|1|A|A|1004
7DUI|1|A|A|1005
7DUI|1|A|C|1006
7DUI|1|A|C|1007
7DUI|1|A|C|1008
7DUI|1|A|G|1009
*
7DUI|1|A|U|1020
7DUI|1|A|G|1021
7DUI|1|A|G|1022
7DUI|1|A|G|1023
7DUI|1|A|G|1024
7DUI|1|A|U|1025
7DUI|1|A|G|1026
7DUI|1|A|C|1027
7DUI|1|A|C|1028
*
7DUI|1|A|G|1033
7DUI|1|A|G|1034
7DUI|1|A|A|1035
7DUI|1|A|G|1036
7DUI|1|A|C|1037
7DUI|1|A|C|1038
7DUI|1|A|C|1039
7DUI|1|A|U|1040
7DUI|1|A|A|1041
7DUI|1|A|G|1042

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains