J3_7DUJ_016

3D structure

PDB id

7DUJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.75 Å

Loop

Sequence

GAACCCG*UGGGGUGCC*GGAGCC

Length

22 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUJ|1|A|G|1003|||A
7DUJ|1|A|A|1004
7DUJ|1|A|A|1005
7DUJ|1|A|C|1006
7DUJ|1|A|C|1007
7DUJ|1|A|C|1008
7DUJ|1|A|G|1009
*
7DUJ|1|A|U|1020
7DUJ|1|A|G|1021
7DUJ|1|A|G|1022
7DUJ|1|A|G|1023
7DUJ|1|A|G|1024
7DUJ|1|A|U|1025
7DUJ|1|A|G|1026
7DUJ|1|A|C|1027
7DUJ|1|A|C|1028
*
7DUJ|1|A|G|1033
7DUJ|1|A|G|1034
7DUJ|1|A|A|1035
7DUJ|1|A|G|1036
7DUJ|1|A|C|1037
7DUJ|1|A|C|1038

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains