J3_7DUK_006
3D structure
- PDB id
- 7DUK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.6 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 7DUK|1|A|A|958, 7DUK|1|A|A|975, 7DUK|1|A|G|976, 7DUK|1|A|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7DUK_006 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0668
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7DUK|1|A|U|955
7DUK|1|A|U|956
7DUK|1|A|U|957
7DUK|1|A|A|958
7DUK|1|A|A|959
7DUK|1|A|U|960
7DUK|1|A|U|961
7DUK|1|A|C|962
*
7DUK|1|A|G|973
7DUK|1|A|A|974
7DUK|1|A|A|975
7DUK|1|A|G|976
7DUK|1|A|A|977
7DUK|1|A|A|978
7DUK|1|A|C|979
7DUK|1|A|C|980
7DUK|1|A|U|981
7DUK|1|A|U|982
7DUK|1|A|A|983
7DUK|1|A|C|984
*
7DUK|1|A|G|1221
7DUK|1|A|G|1222
7DUK|1|A|C|1223
7DUK|1|A|G|1224
7DUK|1|A|A|1225
Current chains
- Chain A
- 30S Ribosomal RNA rRNA
Nearby chains
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14 type Z
- Chain S
- 30S ribosomal protein S19
- Chain W
- RNA (5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3')
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