J3_7DUK_018

3D structure

PDB id

7DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.6 Å

Loop

Sequence

GGGAACCC*GGGGUGC*GAGCCC

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUK|1|A|G|1002
7DUK|1|A|G|1003
7DUK|1|A|G|1003|||A
7DUK|1|A|A|1004
7DUK|1|A|A|1005
7DUK|1|A|C|1006
7DUK|1|A|C|1007
7DUK|1|A|C|1008
*
7DUK|1|A|G|1021
7DUK|1|A|G|1022
7DUK|1|A|G|1023
7DUK|1|A|G|1024
7DUK|1|A|U|1025
7DUK|1|A|G|1026
7DUK|1|A|C|1027
*
7DUK|1|A|G|1034
7DUK|1|A|A|1035
7DUK|1|A|G|1036
7DUK|1|A|C|1037
7DUK|1|A|C|1038
7DUK|1|A|C|1039

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains