J3_7DUL_016

3D structure

PDB id

7DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

Experimental method

X-RAY DIFFRACTION

Resolution

3.62 Å

Loop

Sequence

AGGGAACCCG*UGGGGUGCCC*GGGAGCCCU

Length

29 nucleotides

Bulged bases

7DUL|1|A|A|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7DUL|1|A|A|1001
7DUL|1|A|G|1002
7DUL|1|A|G|1003
7DUL|1|A|G|1003|||A
7DUL|1|A|A|1004
7DUL|1|A|A|1005
7DUL|1|A|C|1006
7DUL|1|A|C|1007
7DUL|1|A|C|1008
7DUL|1|A|G|1009
*
7DUL|1|A|U|1020
7DUL|1|A|G|1021
7DUL|1|A|G|1022
7DUL|1|A|G|1023
7DUL|1|A|G|1024
7DUL|1|A|U|1025
7DUL|1|A|G|1026
7DUL|1|A|C|1027
7DUL|1|A|C|1028
7DUL|1|A|C|1029
*
7DUL|1|A|G|1032
7DUL|1|A|G|1033
7DUL|1|A|G|1034
7DUL|1|A|A|1035
7DUL|1|A|G|1036
7DUL|1|A|C|1037
7DUL|1|A|C|1038
7DUL|1|A|C|1039
7DUL|1|A|U|1040

Current chains

Chain A

30S Ribosomal RNA rRNA

Nearby chains