3D structure

PDB id
7F5S (explore in PDB, NAKB, or RNA 3D Hub)
Description
human delta-METTL18 60S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.72 Å

Loop

Sequence
AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
Length
26 nucleotides
Bulged bases
7F5S|1|L5|C|2470, 7F5S|1|L5|A|2472, 7F5S|1|L5|G|2475, 7F5S|1|L5|G|2503, 7F5S|1|L5|C|2504
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7F5S_022 not in the Motif Atlas
Homologous match to J3_8CRE_016
Geometric discrepancy: 0.5959
The information below is about J3_8CRE_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_65403.1
Basepair signature
cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
Number of instances in this motif group
1

Unit IDs

7F5S|1|L5|A|2451
7F5S|1|L5|G|2452
7F5S|1|L5|A|2453
7F5S|1|L5|U|2454
7F5S|1|L5|G|2455
7F5S|1|L5|G|2456
*
7F5S|1|L5|C|2465
7F5S|1|L5|G|2466
7F5S|1|L5|U|2467
7F5S|1|L5|U|2468
7F5S|1|L5|C|2469
7F5S|1|L5|C|2470
7F5S|1|L5|G|2471
7F5S|1|L5|A|2472
7F5S|1|L5|A|2473
7F5S|1|L5|G|2474
7F5S|1|L5|G|2475
7F5S|1|L5|G|2476
*
7F5S|1|L5|C|2501
7F5S|1|L5|G|2502
7F5S|1|L5|G|2503
7F5S|1|L5|C|2504
7F5S|1|L5|C|2505
7F5S|1|L5|G|2506
7F5S|1|L5|A|2507
7F5S|1|L5|PSU|2508

Current chains

Chain L5
28S rRNA

Nearby chains

Chain L8
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
60S ribosomal protein L8
Chain LG
60S ribosomal protein L7a
Chain LN
60S ribosomal protein L15
Chain LX
60S ribosomal protein L23a
Chain Lj
60S ribosomal protein L37

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1361 s