J3_7F5S_022
3D structure
- PDB id
- 7F5S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human delta-METTL18 60S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.72 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGA(PSU)
- Length
- 26 nucleotides
- Bulged bases
- 7F5S|1|L5|C|2470, 7F5S|1|L5|A|2472, 7F5S|1|L5|G|2475, 7F5S|1|L5|G|2503, 7F5S|1|L5|C|2504
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7F5S_022 not in the Motif Atlas
- Homologous match to J3_8CRE_016
- Geometric discrepancy: 0.5959
- The information below is about J3_8CRE_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_65403.1
- Basepair signature
- cWW-tSH-tHW-F-F-F-tHS-F-cWW-F-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7F5S|1|L5|A|2451
7F5S|1|L5|G|2452
7F5S|1|L5|A|2453
7F5S|1|L5|U|2454
7F5S|1|L5|G|2455
7F5S|1|L5|G|2456
*
7F5S|1|L5|C|2465
7F5S|1|L5|G|2466
7F5S|1|L5|U|2467
7F5S|1|L5|U|2468
7F5S|1|L5|C|2469
7F5S|1|L5|C|2470
7F5S|1|L5|G|2471
7F5S|1|L5|A|2472
7F5S|1|L5|A|2473
7F5S|1|L5|G|2474
7F5S|1|L5|G|2475
7F5S|1|L5|G|2476
*
7F5S|1|L5|C|2501
7F5S|1|L5|G|2502
7F5S|1|L5|G|2503
7F5S|1|L5|C|2504
7F5S|1|L5|C|2505
7F5S|1|L5|G|2506
7F5S|1|L5|A|2507
7F5S|1|L5|PSU|2508
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- 60S ribosomal protein L8
- Chain LG
- 60S ribosomal protein L7a
- Chain LN
- 60S ribosomal protein L15
- Chain LX
- 60S ribosomal protein L23a
- Chain Lj
- 60S ribosomal protein L37
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