J3_7JQC_004
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7JQC|1|A|G|991
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7JQC_004 not in the Motif Atlas
- Homologous match to J3_4V88_033
- Geometric discrepancy: 0.1362
- The information below is about J3_4V88_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_38616.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7JQC|1|A|A|938
7JQC|1|A|U|939
7JQC|1|A|U|940
7JQC|1|A|C|941
*
7JQC|1|A|G|985
7JQC|1|A|G|986
7JQC|1|A|A|987
7JQC|1|A|C|988
7JQC|1|A|C|989
7JQC|1|A|A|990
7JQC|1|A|G|991
7JQC|1|A|A|992
7JQC|1|A|G|993
*
7JQC|1|A|C|1000
7JQC|1|A|A|1001
7JQC|1|A|U|1002
7JQC|1|A|U|1003
7JQC|1|A|U|1004
Current chains
- Chain A
- rRNA
Nearby chains
- Chain C
- eS1
- Chain P
- uS15
- Chain X
- Uncharacterized protein
- Chain b
- 40S ribosomal protein S26
Coloring options: