J3_7JQC_010

3D structure

PDB id

7JQC (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

7JQC|1|A|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7JQC|1|A|U|682
7JQC|1|A|G|683
7JQC|1|A|G|684
7JQC|1|A|A|685
*
7JQC|1|A|U|917
7JQC|1|A|U|918
7JQC|1|A|A|919
7JQC|1|A|A|920
7JQC|1|A|G|921
7JQC|1|A|A|922
7JQC|1|A|G|923
*
7JQC|1|A|C|1019
7JQC|1|A|A|1020
7JQC|1|A|U|1021
7JQC|1|A|U|1022
7JQC|1|A|A|1023

Current chains

Chain A

rRNA

Nearby chains

Chain I

eS7

Chain O

uS17

Chain P

uS15

Chain Y

uS8

Chain c

Uncharacterized protein

Chain e

eS27