J3_7JQC_011
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CGGCCCGGACAC*GUGGGUG*UUAGAUGUCCG
- Length
- 30 nucleotides
- Bulged bases
- 7JQC|1|A|G|1274, 7JQC|1|A|G|1507, 7JQC|1|A|U|1509
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQC|1|A|C|1268
7JQC|1|A|G|1269
7JQC|1|A|G|1270
7JQC|1|A|C|1271
7JQC|1|A|C|1272
7JQC|1|A|C|1273
7JQC|1|A|G|1274
7JQC|1|A|G|1275
7JQC|1|A|A|1276
7JQC|1|A|C|1277
7JQC|1|A|A|1278
7JQC|1|A|C|1279
*
7JQC|1|A|G|1318
7JQC|1|A|U|1319
7JQC|1|A|G|1320
7JQC|1|A|G|1321
7JQC|1|A|G|1322
7JQC|1|A|U|1323
7JQC|1|A|G|1324
*
7JQC|1|A|U|1504
7JQC|1|A|U|1505
7JQC|1|A|A|1506
7JQC|1|A|G|1507
7JQC|1|A|A|1508
7JQC|1|A|U|1509
7JQC|1|A|G|1510
7JQC|1|A|U|1511
7JQC|1|A|C|1512
7JQC|1|A|C|1513
7JQC|1|A|G|1514
Current chains
- Chain A
- rRNA
Nearby chains
- Chain L
- S10_plectin domain-containing protein
- Chain N
- eS12
- Chain Q
- uS19
- Chain g
- eS31
Coloring options: