J3_7JQC_012
3D structure
- PDB id
- 7JQC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-CoV-2 Nsp1, CrPV IRES and rabbit 40S ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CACUGACUGGCUCAGCGUG*CCGUUGAACCCCAUUCGUGAUGGGGAUCGG*CCAUGAACGAG
- Length
- 60 nucleotides
- Bulged bases
- 7JQC|1|A|U|1535, 7JQC|1|A|U|1543, 7JQC|1|A|U|1585, 7JQC|1|A|G|1587, 7JQC|1|A|C|1591, 7JQC|1|A|U|1599, 7JQC|1|A|G|1632
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7JQC|1|A|C|1532
7JQC|1|A|A|1533
7JQC|1|A|C|1534
7JQC|1|A|U|1535
7JQC|1|A|G|1536
7JQC|1|A|A|1537
7JQC|1|A|C|1538
7JQC|1|A|U|1539
7JQC|1|A|G|1540
7JQC|1|A|G|1541
7JQC|1|A|C|1542
7JQC|1|A|U|1543
7JQC|1|A|C|1544
7JQC|1|A|A|1545
7JQC|1|A|G|1546
7JQC|1|A|C|1547
7JQC|1|A|G|1548
7JQC|1|A|U|1549
7JQC|1|A|G|1550
*
7JQC|1|A|C|1582
7JQC|1|A|C|1583
7JQC|1|A|G|1584
7JQC|1|A|U|1585
7JQC|1|A|U|1586
7JQC|1|A|G|1587
7JQC|1|A|A|1588
7JQC|1|A|A|1589
7JQC|1|A|C|1590
7JQC|1|A|C|1591
7JQC|1|A|C|1592
7JQC|1|A|C|1593
7JQC|1|A|A|1594
7JQC|1|A|U|1595
7JQC|1|A|U|1596
7JQC|1|A|C|1597
7JQC|1|A|G|1598
7JQC|1|A|U|1599
7JQC|1|A|G|1600
7JQC|1|A|A|1601
7JQC|1|A|U|1602
7JQC|1|A|G|1603
7JQC|1|A|G|1604
7JQC|1|A|G|1605
7JQC|1|A|G|1606
7JQC|1|A|A|1607
7JQC|1|A|U|1608
7JQC|1|A|C|1609
7JQC|1|A|G|1610
7JQC|1|A|G|1611
*
7JQC|1|A|C|1628
7JQC|1|A|C|1629
7JQC|1|A|A|1630
7JQC|1|A|U|1631
7JQC|1|A|G|1632
7JQC|1|A|A|1633
7JQC|1|A|A|1634
7JQC|1|A|C|1635
7JQC|1|A|G|1636
7JQC|1|A|A|1637
7JQC|1|A|G|1638
Current chains
- Chain A
- rRNA
Nearby chains
- Chain E
- Ribosomal protein S3
- Chain G
- uS7
- Chain Q
- uS19
- Chain R
- Uncharacterized protein
- Chain T
- uS13
- Chain U
- Uncharacterized protein
- Chain V
- uS10
- Chain a
- eS25
Coloring options: