J3_7JQL_051

3D structure

PDB id

7JQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with Bac7-001, mRNA, and deacylated P-site tRNA at 3.00A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UG*UGUUG*CGCAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JQL_051 not in the Motif Atlas

Homologous match to J3_6CZR_024

Geometric discrepancy: 0.1643

The information below is about J3_6CZR_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04260.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

7JQL|1|2a|U|1073
7JQL|1|2a|G|1074
*
7JQL|1|2a|U|1083
7JQL|1|2a|G|1084
7JQL|1|2a|U|1085
7JQL|1|2a|U|1086
7JQL|1|2a|G|1087
*
7JQL|1|2a|C|1098
7JQL|1|2a|G|1099
7JQL|1|2a|C|1100
7JQL|1|2a|A|1101
7JQL|1|2a|A|1102

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2e

30S ribosomal protein S5