J3_7JSS_028

3D structure

PDB id

7JSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7JSS|1|1|U|321, 7JSS|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSS_028 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1675

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JSS|1|1|G|297
7JSS|1|1|G|298
7JSS|1|1|A|299
7JSS|1|1|A|300
7JSS|1|1|G|301
*
7JSS|1|1|C|316
7JSS|1|1|G|317
7JSS|1|1|C|318
7JSS|1|1|G|319
7JSS|1|1|A|320
7JSS|1|1|U|321
7JSS|1|1|A|322
7JSS|1|1|C|323
7JSS|1|1|A|324
7JSS|1|1|G|325
*
7JSS|1|1|C|337
7JSS|1|1|G|338
7JSS|1|1|U|339
7JSS|1|1|A|340
7JSS|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24