J3_7JSZ_029

3D structure

PDB id

7JSZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

ArfB Rescue of a 70S Ribosome stalled on truncated mRNA with a partial A-site codon (+2-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7JSZ|1|1|U|321, 7JSZ|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JSZ_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1639

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JSZ|1|1|G|297
7JSZ|1|1|G|298
7JSZ|1|1|A|299
7JSZ|1|1|A|300
7JSZ|1|1|G|301
*
7JSZ|1|1|C|316
7JSZ|1|1|G|317
7JSZ|1|1|C|318
7JSZ|1|1|G|319
7JSZ|1|1|A|320
7JSZ|1|1|U|321
7JSZ|1|1|A|322
7JSZ|1|1|C|323
7JSZ|1|1|A|324
7JSZ|1|1|G|325
*
7JSZ|1|1|C|337
7JSZ|1|1|G|338
7JSZ|1|1|U|339
7JSZ|1|1|A|340
7JSZ|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24