J3_7JT1_029

3D structure

PDB id

7JT1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound (+9-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7JT1|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT1_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1679

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JT1|1|1|G|297
7JT1|1|1|G|298
7JT1|1|1|A|299
7JT1|1|1|A|300
7JT1|1|1|G|301
*
7JT1|1|1|C|316
7JT1|1|1|G|317
7JT1|1|1|C|318
7JT1|1|1|G|319
7JT1|1|1|A|320
7JT1|1|1|U|321
7JT1|1|1|A|322
7JT1|1|1|C|323
7JT1|1|1|A|324
7JT1|1|1|G|325
*
7JT1|1|1|C|337
7JT1|1|1|G|338
7JT1|1|1|U|339
7JT1|1|1|A|340
7JT1|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24