J3_7JT2_029

3D structure

PDB id

7JT2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome stalled on long mRNA with ArfB bound in the A site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7JT2|1|1|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT2_029 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1667

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7JT2|1|1|G|297
7JT2|1|1|G|298
7JT2|1|1|A|299
7JT2|1|1|A|300
7JT2|1|1|G|301
*
7JT2|1|1|C|316
7JT2|1|1|G|317
7JT2|1|1|C|318
7JT2|1|1|G|319
7JT2|1|1|A|320
7JT2|1|1|U|321
7JT2|1|1|A|322
7JT2|1|1|C|323
7JT2|1|1|A|324
7JT2|1|1|G|325
*
7JT2|1|1|C|337
7JT2|1|1|G|338
7JT2|1|1|U|339
7JT2|1|1|A|340
7JT2|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24