3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GC*GGAAUAU*AGC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K00_001 not in the Motif Atlas
Homologous match to J3_5J7L_001
Geometric discrepancy: 0.0521
The information below is about J3_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_67856.4
Basepair signature
cWW-cWW-cSW-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7K00|1|A|G|46
7K00|1|A|C|47
*
7K00|1|A|G|361
7K00|1|A|G|362
7K00|1|A|A|363
7K00|1|A|A|364
7K00|1|A|U|365
7K00|1|A|A|366
7K00|1|A|U|367
*
7K00|1|A|A|393
7K00|1|A|G|394
7K00|1|A|C|395

Current chains

Chain A
16S rRNA

Nearby chains

Chain L
30S ribosomal protein S12
Chain P
30S ribosomal protein S16

Coloring options:


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