3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
UCGACC*GAAA*UA
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K00_020 not in the Motif Atlas
Homologous match to J3_5J7L_043
Geometric discrepancy: 0.0727
The information below is about J3_5J7L_043
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_92705.1
Basepair signature
cWW-F-cWW-F-F-F-F-F-cWW
Number of instances in this motif group
1

Unit IDs

7K00|1|a|U|1344
7K00|1|a|C|1345
7K00|1|a|G|1346
7K00|1|a|A|1347
7K00|1|a|C|1348
7K00|1|a|C|1349
*
7K00|1|a|G|1382
7K00|1|a|A|1383
7K00|1|a|A|1384
7K00|1|a|A|1385
*
7K00|1|a|U|1402
7K00|1|a|A|1403

Current chains

Chain a
23S rRNA

Nearby chains

Chain s
50S ribosomal protein L23

Coloring options:


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