3D structure

PDB id
7K00 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Bacterial Ribosome at 2 Angstrom Resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
1.98 Å

Loop

Sequence
GCA*UCAUAGUGAUCC*GCUCAAC
Length
22 nucleotides
Bulged bases
7K00|1|a|A|2388, 7K00|1|a|U|2390, 7K00|1|a|A|2426
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K00_036 not in the Motif Atlas
Homologous match to J3_5J7L_070
Geometric discrepancy: 0.065
The information below is about J3_5J7L_070
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

7K00|1|a|G|2282
7K00|1|a|C|2283
7K00|1|a|A|2284
*
7K00|1|a|U|2384
7K00|1|a|C|2385
7K00|1|a|A|2386
7K00|1|a|U|2387
7K00|1|a|A|2388
7K00|1|a|G|2389
7K00|1|a|U|2390
7K00|1|a|G|2391
7K00|1|a|A|2392
7K00|1|a|U|2393
7K00|1|a|C|2394
7K00|1|a|C|2395
*
7K00|1|a|G|2421
7K00|1|a|C|2422
7K00|1|a|U|2423
7K00|1|a|C|2424
7K00|1|a|A|2425
7K00|1|a|A|2426
7K00|1|a|C|2427

Current chains

Chain a
23S rRNA

Nearby chains

Chain 0
50S ribosomal protein L33
Chain 2
50S ribosomal protein L35
Chain 5
E-site tRNA
Chain k
50S ribosomal protein L15
Chain v
50S ribosomal protein L27

Coloring options:


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