J3_7K51_003

3D structure

PDB id

7K51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7K51|1|1|U|686, 7K51|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K51_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.1384

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7K51|1|1|U|683
7K51|1|1|G|684
7K51|1|1|A|685
7K51|1|1|U|686
7K51|1|1|C|687
7K51|1|1|U|688
7K51|1|1|A|689
*
7K51|1|1|U|773
7K51|1|1|G|774
7K51|1|1|G|775
*
7K51|1|1|C|791
7K51|1|1|A|792
7K51|1|1|A|793
7K51|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2