J3_7K52_030

3D structure

PDB id

7K52 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

7K52|1|1|U|321, 7K52|1|1|C|323

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K52_030 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1628

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7K52|1|1|G|297
7K52|1|1|G|298
7K52|1|1|A|299
7K52|1|1|A|300
7K52|1|1|G|301
*
7K52|1|1|C|316
7K52|1|1|G|317
7K52|1|1|C|318
7K52|1|1|G|319
7K52|1|1|A|320
7K52|1|1|U|321
7K52|1|1|A|322
7K52|1|1|C|323
7K52|1|1|A|324
7K52|1|1|G|325
*
7K52|1|1|C|337
7K52|1|1|G|338
7K52|1|1|U|339
7K52|1|1|A|340
7K52|1|1|C|341

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain u

50S ribosomal protein L24