3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CAG*CGAAC*GAUG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K54_004 not in the Motif Atlas
Homologous match to J3_7RQB_005
Geometric discrepancy: 0.0732
The information below is about J3_7RQB_005
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_44724.4
Basepair signature
cWW-tSH-F-cWW-tHS-cWW-F
Number of instances in this motif group
6

Unit IDs

7K54|1|1|C|698
7K54|1|1|A|699
7K54|1|1|G|700
*
7K54|1|1|C|732
7K54|1|1|G|733
7K54|1|1|A|734
7K54|1|1|A|735
7K54|1|1|C|736
*
7K54|1|1|G|760
7K54|1|1|A|761
7K54|1|1|U|762
7K54|1|1|G|763

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain b
50S ribosomal protein L2

Coloring options:


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