J3_7KGB_022
3D structure
- PDB id
- 7KGB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of A2296-methylated Mycobacterium tuberculosis ribosome bound with SEQ-9
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 7KGB|1|a|A|968, 7KGB|1|a|G|969, 7KGB|1|a|A|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7KGB_022 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.0719
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.1
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
7KGB|1|a|A|948
7KGB|1|a|U|949
7KGB|1|a|U|950
7KGB|1|a|A|951
7KGB|1|a|A|952
7KGB|1|a|U|953
7KGB|1|a|U|954
7KGB|1|a|C|955
*
7KGB|1|a|G|966
7KGB|1|a|A|967
7KGB|1|a|A|968
7KGB|1|a|G|969
7KGB|1|a|A|970
7KGB|1|a|A|971
7KGB|1|a|C|972
7KGB|1|a|C|973
7KGB|1|a|U|974
7KGB|1|a|U|975
7KGB|1|a|A|976
7KGB|1|a|C|977
*
7KGB|1|a|G|1213
7KGB|1|a|G|1214
7KGB|1|a|C|1215
7KGB|1|a|U|1216
7KGB|1|a|U|1217
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
Coloring options: