J3_7KI3_001

3D structure

PDB id

7KI3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human Argonaute2:miR-122 bound to the HCV genotype 1a site-1 RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGACAAU*AG*CGA

Length

12 nucleotides

Bulged bases

7KI3|1|B|A|10, 7KI3|1|B|A|12, 7KI3|1|B|A|13, 7KI3|1|C|G|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10118.1

Basepair signature

cWW-F-cWW-F-cWW

Number of instances in this motif group

1

Unit IDs

7KI3|1|B|U|8
7KI3|1|B|G|9
7KI3|1|B|A|10
7KI3|1|B|C|11
7KI3|1|B|A|12
7KI3|1|B|A|13
7KI3|1|B|U|14
*
7KI3|1|C|A|4
7KI3|1|C|G|5
*
7KI3|1|C|C|20
7KI3|1|C|G|21
7KI3|1|C|A|22

Current chains

Chain B

miR-122

Chain C

HCV genotype 1a miR-122 site-1

Nearby chains

Chain A

Protein argonaute-2