J3_7LH5_005

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CAAGC*GCUAGUAA*UGAAUACG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LH5|1|AA|C|936
7LH5|1|AA|A|937
7LH5|1|AA|A|938
7LH5|1|AA|G|939
7LH5|1|AA|C|940
*
7LH5|1|AA|G|1343
7LH5|1|AA|C|1344
7LH5|1|AA|U|1345
7LH5|1|AA|A|1346
7LH5|1|AA|G|1347
7LH5|1|AA|U|1348
7LH5|1|AA|A|1349
7LH5|1|AA|A|1350
*
7LH5|1|AA|U|1372
7LH5|1|AA|G|1373
7LH5|1|AA|A|1374
7LH5|1|AA|A|1375
7LH5|1|AA|U|1376
7LH5|1|AA|A|1377
7LH5|1|AA|C|1378
7LH5|1|AA|G|1379

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AW

Transfer RNA; tRNA