J3_7LH5_025
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- CCCAUAG*CG*UCGG
- Length
- 13 nucleotides
- Bulged bases
- 7LH5|1|BB|U|14, 7LH5|1|BB|C|109
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LH5_025 not in the Motif Atlas
- Homologous match to J3_7A0S_021
- Geometric discrepancy: 0.3407
- The information below is about J3_7A0S_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47324.1
- Basepair signature
- cWW-F-F-tSS-F-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7LH5|1|BB|C|10
7LH5|1|BB|C|11
7LH5|1|BB|C|12
7LH5|1|BB|A|13
7LH5|1|BB|U|14
7LH5|1|BB|A|15
7LH5|1|BB|G|16
*
7LH5|1|BB|C|68
7LH5|1|BB|G|69
*
7LH5|1|BB|U|108
7LH5|1|BB|C|109
7LH5|1|BB|G|110
7LH5|1|BB|G|111
Current chains
- Chain BB
- 5S ribosomal RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L27
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BS
- 50S ribosomal protein L18
- Chain BZ
- 50S ribosomal protein L25
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