J3_7LH5_038
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- AUAGC*GCAGGGGAUUGAAAAUCCCCGUGUCC*GU
- Length
- 33 nucleotides
- Bulged bases
- 7LH5|1|CW|U|8, 7LH5|1|CW|U|47, 7LH5|1|CW|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
7LH5|1|CW|A|7
7LH5|1|CW|U|8
7LH5|1|CW|A|9
7LH5|1|CW|G|10
7LH5|1|CW|C|11
*
7LH5|1|CW|G|24
7LH5|1|CW|C|25
7LH5|1|CW|A|26
7LH5|1|CW|G|27
7LH5|1|CW|G|28
7LH5|1|CW|G|29
7LH5|1|CW|G|30
7LH5|1|CW|A|31
7LH5|1|CW|U|32
7LH5|1|CW|U|33
7LH5|1|CW|G|34
7LH5|1|CW|A|35
7LH5|1|CW|A|36
7LH5|1|CW|A|37
7LH5|1|CW|A|38
7LH5|1|CW|U|39
7LH5|1|CW|C|40
7LH5|1|CW|C|41
7LH5|1|CW|C|42
7LH5|1|CW|C|43
7LH5|1|CW|G|44
7LH5|1|CW|U|45
7LH5|1|CW|G|46
7LH5|1|CW|U|47
7LH5|1|CW|C|48
7LH5|1|CW|C|49
*
7LH5|1|CW|G|65
7LH5|1|CW|U|66
Current chains
- Chain CW
- E-Site tRNA Phe and A-site tRNA Phe
Nearby chains
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CG
- 30S ribosomal protein S7
- Chain CK
- 30S ribosomal protein S11
- Chain CV
- Transfer RNA; tRNA
- Chain CX
- mRNA
- Chain D6
- 50S ribosomal protein L33
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