J3_7LS1_001

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGCG*CGUACG*CCGG

Length

15 nucleotides

Bulged bases

7LS1|1|A2|C|159

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|112
7LS1|1|A2|A|113
7LS1|1|A2|G|114
7LS1|1|A2|C|115
7LS1|1|A2|G|116
*
7LS1|1|A2|C|155
7LS1|1|A2|G|156
7LS1|1|A2|U|157
7LS1|1|A2|A|158
7LS1|1|A2|C|159
7LS1|1|A2|G|160
*
7LS1|1|A2|C|275
7LS1|1|A2|C|276
7LS1|1|A2|G|277
7LS1|1|A2|G|278

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain F1

60S ribosomal protein L13

Chain H1

60S ribosomal protein L15

Chain b2

60S ribosomal protein L35

Chain c2

60S ribosomal protein L36