J3_7LS1_003

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGAAGCCCGUCGCCG*CACGGGG

Length

26 nucleotides

Bulged bases

7LS1|1|A2|A|857, 7LS1|1|A2|C|867, 7LS1|1|A2|C|868, 7LS1|1|A2|G|870, 7LS1|1|A2|C|1094

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|C|719
7LS1|1|A2|C|720
*
7LS1|1|A2|G|853
7LS1|1|A2|A|854
7LS1|1|A2|G|855
7LS1|1|A2|G|856
7LS1|1|A2|A|857
7LS1|1|A2|A|858
7LS1|1|A2|G|859
7LS1|1|A2|C|867
7LS1|1|A2|C|868
7LS1|1|A2|C|869
7LS1|1|A2|G|870
7LS1|1|A2|U|871
7LS1|1|A2|C|872
7LS1|1|A2|G|873
7LS1|1|A2|C|874
7LS1|1|A2|C|875
7LS1|1|A2|G|876
*
7LS1|1|A2|C|1092
7LS1|1|A2|A|1093
7LS1|1|A2|C|1094
7LS1|1|A2|G|1095
7LS1|1|A2|G|1096
7LS1|1|A2|G|1097
7LS1|1|A2|G|1098

Current chains

Chain A2

28S rRNA

Nearby chains

Chain A1

60S ribosomal protein L7

Chain F2

60S ribosomal protein L4

Chain H2

60S ribosomal protein L6

Chain Y2

60S ribosomal protein L32