J3_7LS1_013

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUC*GCCU(5MC)ACGAUCCU*A(OMG)(MHG)UGUC

Length

23 nucleotides

Bulged bases

7LS1|1|A2|U|4026

QA status

Modified nucleotides: 5MC, OMG, MHG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|A2|G|3880
7LS1|1|A2|U|3881
7LS1|1|A2|C|3882
*
7LS1|1|A2|G|3983
7LS1|1|A2|C|3984
7LS1|1|A2|C|3985
7LS1|1|A2|U|3986
7LS1|1|A2|5MC|3987
7LS1|1|A2|A|3988
7LS1|1|A2|C|3989
7LS1|1|A2|G|3990
7LS1|1|A2|A|3991
7LS1|1|A2|U|3992
7LS1|1|A2|C|3993
7LS1|1|A2|C|3994
7LS1|1|A2|U|3995
*
7LS1|1|A2|A|4021
7LS1|1|A2|OMG|4022
7LS1|1|A2|MHG|4023
7LS1|1|A2|U|4024
7LS1|1|A2|G|4025
7LS1|1|A2|U|4026
7LS1|1|A2|C|4027

Current chains

Chain A2

28S rRNA

Nearby chains

Chain K2

60S ribosomal protein L18

Chain N2

60S ribosomal protein L21

Chain U2

60S ribosomal protein L27a

Chain i2

60S ribosomal protein L36a

Chain n2

Transfer RNA; tRNA