J3_7LS1_017

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

7LS1|1|B2|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7LS1|1|B2|C|9
7LS1|1|B2|C|10
7LS1|1|B2|A|11
7LS1|1|B2|U|12
7LS1|1|B2|A|13
7LS1|1|B2|C|14
*
7LS1|1|B2|G|65
7LS1|1|B2|G|66
7LS1|1|B2|C|67
*
7LS1|1|B2|G|108
7LS1|1|B2|U|109
7LS1|1|B2|G|110

Current chains

Chain B2

5S rRNA

Nearby chains

Chain A2

Large subunit ribosomal RNA; LSU rRNA

Chain D1

60S ribosomal protein L10-like

Chain G2

60S ribosomal protein L5

Chain N2

60S ribosomal protein L21