J3_7LS1_025
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUUAAU(PSU)U*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 7LS1|1|m2|G|1258, 7LS1|1|m2|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_025 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1683
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7LS1|1|m2|C|1239
7LS1|1|m2|U|1240
7LS1|1|m2|U|1241
7LS1|1|m2|A|1242
7LS1|1|m2|A|1243
7LS1|1|m2|U|1244
7LS1|1|m2|PSU|1245
7LS1|1|m2|U|1246
*
7LS1|1|m2|G|1257
7LS1|1|m2|G|1258
7LS1|1|m2|G|1259
7LS1|1|m2|A|1260
7LS1|1|m2|A|1261
7LS1|1|m2|A|1262
7LS1|1|m2|C|1263
7LS1|1|m2|C|1264
7LS1|1|m2|U|1265
7LS1|1|m2|C|1266
7LS1|1|m2|A|1267
7LS1|1|m2|C|1268
*
7LS1|1|m2|G|1518
7LS1|1|m2|G|1519
7LS1|1|m2|C|1520
7LS1|1|m2|U|1521
7LS1|1|m2|G|1522
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain A3
- 40S ribosomal protein S18
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain x2
- 40S ribosomal protein S15
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